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BIOINFORMATICS

Dawn M. Simon, Nicholas A.C. Clarke, Bonnie A. McNeil, Ian Johnson, Davin Pantuso, Lixin Dai, Dinggeng Chai, and Steven Zimmerly

Group II introns in Eubacteria and Archaea: ORF-less introns and new varieties
RNA Published August 1, 2008, 10.1261/rna.1056108 [Abstract] [PDF] [HTML Page - index.htslp]  

ARTICLE

Sylvie Audigier, Janique Guiramand, Leonel Prado-Lourenco, Caroline Conte, Irma Gabriela Gonzalez-Herrera, Catherine Cohen-Solal, Max Récasens, and Anne-Catherine Prats

Potent activation of FGF-2 IRES-dependent mechanism of translation during brain development
RNA Published August 1, 2008, 10.1261/rna.790608 [Abstract] [PDF]  

Shinya Takahashi, Yasuhiro Araki, Yuriko Ohya, Takeshi Sakuno, Shin-Ichi Hoshino, Kenji Kontani, Hiroshi Nishina, and Toshiaki Katada

Upf1 potentially serves as a RING-related E3 ubiquitin ligase via its association with Upf3 in yeast
RNA Published August 1, 2008, 10.1261/rna.536308 [Abstract] [PDF]  

Christina L. Sanders, Kristin J. Lohr, Holly L. Gambill, Ryan B. Curran, and James F. Curran

Anticodon loop mutations perturb reading frame maintenance by the E site tRNA
RNA Published July 30, 2008, 10.1261/rna.1170008 [Abstract] [PDF]  

Byung-Hak Song, Sang-Im Yun, Yu-Jeong Choi, Jeong-Min Kim, Chan-Hee Lee, and Young-Min Lee

A complex RNA motif defined by three discontinuous 5-nucleotide-long strands is essential for Flavivirus RNA replication
RNA Published July 30, 2008, 10.1261/rna.993608 [Abstract] [PDF] [Supplemental Research Data]  

Lea Chia-Ling Hsu, Hsiang-Ying Chen, Yi-Wen Lin, Wei-Chen Chu, Ming-Jyun Lin, Yu-Ting Yan, and Pauline H. Yen

DAZAP1, an hnRNP protein, is required for normal growth and spermatogenesis in mice
RNA Published July 30, 2008, 10.1261/rna.1152808 [Abstract] [PDF]  

Rosalind Williams-Carrier, Tiffany Kroeger, and Alice Barkan

Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand
RNA Published July 30, 2008, 10.1261/rna.1077708 [Abstract] [PDF] [Supplemental Research Data]  

Wojciech Rypniewski, Dorota A. Adamiak, Jan Milecki, and Ryszard W. Adamiak

Noncanonical G(syn)–G(anti) base pairs stabilized by sulphate anions in two X-ray structures of the (GUGGUCUGAUGAGGCC) RNA duplex
RNA Published July 24, 2008, 10.1261/rna.1164308 [Abstract] [PDF] [Supplemental Reseach Data]  

Andrea L. Cerrone-Szakal, Durga M. Chadalavada, Barbara L. Golden, and Philip C. Bevilacqua

Mechanistic characterization of the HDV genomic ribozyme: The cleavage site base pair plays a structural role in facilitating catalysis
RNA Published July 24, 2008, 10.1261/rna.1140308 [Abstract] [PDF]  

Toby J. Soper and Sarah A. Woodson

The rpoS mRNA leader recruits Hfq to facilitate annealing with DsrA sRNA
RNA Published July 24, 2008, 10.1261/rna.1110608 [Abstract] [PDF] [Supplemental Reseach Data]  

Olga R. Borodulina and Dmitri A. Kramerov

Transcripts synthesized by RNA polymerase III can be polyadenylated in an AAUAAA-dependent manner
RNA Published July 24, 2008, 10.1261/rna.1006608 [Abstract] [PDF] [Supplemental Reseach Data]  

Laurent Metzinger, Marc Hallier, and Brice Felden

The highest affinity binding site of small protein B on transfer messenger RNA is outside the tRNA domain
RNA Published July 22, 2008, 10.1261/rna.1185808 [Abstract] [PDF]  

Bryan S. Sibert, Nathan Fischel-Ghodsian, and Jeffrey R. Patton

Partial activity is seen with many substitutions of highly conserved active site residues in human Pseudouridine synthase 1
RNA Published July 22, 2008, 10.1261/rna.984508 [Abstract] [PDF]  

Alejandro Ramirez, Stewart Shuman, and Beate Schwer

Human RNA 5'-kinase (hClp1) can function as a tRNA splicing enzyme in vivo
RNA Published July 22, 2008, 10.1261/rna.1142908 [Abstract] [PDF]  

Leonid V. Aseev, Alexandrina A. Levandovskaya, Ludmila S. Tchufistova, Nadezda V. Scaptsova, and Irina V. Boni

A new regulatory circuit in ribosomal protein operons: S2-mediated control of the rpsB-tsf expression in vivo
RNA Published July 22, 2008, 10.1261/rna.1099108 [Abstract] [PDF]  

Kamila Belhocine, Anthony B. Mak, and Benoit Cousineau

Trans-splicing versatility of the Ll.LtrB group II intron
RNA Published July 22, 2008, 10.1261/rna.1083508 [Abstract] [PDF]  

Jing Zhou, Qiaoqiao Wang, Ling-Ling Chen, and Gordon G. Carmichael

On the mechanism of induction of heterochromatin by the RNA-binding protein vigilin
RNA Published July 22, 2008, 10.1261/rna.1036308 [Abstract] [PDF]  

REPORT

Chia-ying Chu and Tariq M. Rana

Potent RNAi by short RNA triggers
RNA Published July 24, 2008, 10.1261/rna.1161908 [Abstract] [PDF] [Supplemental Reseach Data] OPEN ACCESS ARTICLE  

Valentina Iadevaia, Sara Caldarola, Elisa Tino, Francesco Amaldi, and Fabrizio Loreni

All translation elongation factors and the e, f, and h subunits of translation initiation factor 3 are encoded by 5'-terminal oligopyrimidine (TOP) mRNAs
RNA Published July 24, 2008, 10.1261/rna.1037108 [Abstract] [PDF]  

PERSPECTIVE

Kwaku T. Dayie and Richard A. Padgett

A glimpse into the active site of a group II intron and maybe the spliceosome, too
RNA Published July 24, 2008, 10.1261/rna.1154408 [Abstract] [PDF]  

METHOD

Lars Dölken, Zsolt Ruzsics, Bernd Rädle, Caroline C. Friedel, Ralf Zimmer, Jörg Mages, Reinhard Hoffmann, Paul Dickinson, Thorsten Forster, Peter Ghazal, and Ulrich H. Koszinowski

High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay
RNA Published July 24, 2008, 10.1261/rna.1136108 [Abstract] [PDF] [Supplemental Reseach Data]