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Future Table of Contents: Jun 1, 2008; 14 (6)

      Down Perspective
      Down Book Review
      Down Letter to the Editor
      Down Bioinformatics
      Down Report
      Down Articles
      Down Method

PerspectiveBack

Jesse C. Cochrane and Scott A. Strobel
Riboswitch effectors as protein enzyme cofactors

Book ReviewBack

Mike Harris
Ribozymes and RNA Catalysis, edited by David M. Lilly and Fritz Eckstein. 2007. RSC Publishing, Cambridge, UK. ISBN (online): 978-1-84755-798-8, ISBN (print): 978-0-85404-253-1.

Letter to the EditorBack

MinJung Kim, Bhavita Patel, Kourtney E. Schroeder, Abbas Raza, and Jeff DeJong
Organization and transcriptional output of a novel mRNA-like piRNA gene (mpiR) located on mouse chromosome 10

BioinformaticsBack

Xiaowei Wang
miRDB: A microRNA target prediction and functional annotation database with a wiki interface

ReportBack

Jean-Denis Beaudoin and Jean-Pierre Perreault
Potassium ions modulate a G-quadruplex-ribozyme's activity

ArticlesBack

Michelle L. Ammerman, John C. Fisk, and Laurie K. Read
gRNA/pre-mRNA annealing and RNA chaperone activities of RBP16

Hal P. Bogerd and Bryan R. Cullen
Single-stranded RNA facilitates nucelocapsid: APOBEC3G complex formation

Laura A. Copela, Cesar F. Fernandez, R. Lynn Sherrer, and Sandra L. Wolin
Competition between the Rex1 exonuclease and the La protein affects both Trf4p-mediated RNA quality control and pre-tRNA maturation

Feng Ding, Shantanu Sharma, Poornima Chalasani, Vadim V. Demidov, Natalia E. Broude, and Nikolay V. Dokholyan
Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms

Olga Fedorova and Anna Marie Pyle
A conserved element that stabilizes the group II intron active site

Elena Iakhiaeva, Jacek Wower, Iwona K. Wower, and Christian Zwieb
The 5e motif of eukaryotic signal recognition particle RNA contains a conserved adenosine for the binding of SRP72

Joanna Kowalska, Magdalena Lewdorowicz, Joanna Zuberek, Ewa Grudzien-Nogalska, Elzbieta Bojarska, Janusz Stepinski, Robert E. Rhoads, Edward Darzynkiewicz, Richard E. Davis, and Jacek Jemielity
Synthesis and characterization of mRNA cap analogs containing phosphorothioate substitutions that bind tightly to eIF4E and are resistant to the decapping pyrophosphatase DcpS

Julie A. Law, Sean F. O'Hearn, and Barbara Sollner-Webb
Trypanosoma brucei RNA editing protein TbMP42 (band VI) is crucial for the endonucleolytic cleavages but not the subsequent steps of U-deletion and U-insertion

Shin Miyakawa, Yusuke Nomura, Taiichi Sakamoto, Yoshiki Yamaguchi, Koichi Kato, Satoko Yamazaki, and Yoshikazu Nakamura
Structural and molecular basis for hyperspecificity of RNA aptamer to human immunoglobulin G

Subba Rao Nallagatla and Philip C. Bevilacqua
Nucleoside modifications modulate activation of the protein kinase PKR in an RNA structure-specific manner

Dasaradhi Palakodeti, Magda Smielewska, Yi-Chien Lu, Gene Yeo, and Brenton R. Graveley
The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians

Eva M. Riedmann, Sandy Schopoff, Jochen C. Hartner, and Michael F. Jantsch
Specificity of ADAR-mediated RNA editing in newly identified targets

Aleks Schein, Sharon Sheffy-Levin, Fabian Glaser, and Gadi Schuster
The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme

Elias Seif and Sidney Altman
RNase P cleaves the adenine riboswitch and stabilizes pbuE mRNA in Bacillus subtilis

Vincent Shen, Hudan Liu, Shin-Wu Liu, Xinfu Jiao, and Megerditch Kiledjian
DcpS scavenger decapping enzyme can modulate pre-mRNA splicing

Ilia Targanski and Vera Cherkasova
Analysis of genomic tRNA sets from Bacteria, Archaea, and Eukarya points to anticodon-codon hydrogen bonds as a major determinant of tRNA compositional variations

Hannah L. Townsend, Babal K. Jha, Jian-Qiu Han, N. Karl Maluf, Robert H. Silverman, and David J. Barton
viral RNA competitively inhibits the antiviral endoribonuclease domain of RNase L

Kristi D. Viles and Bruce A. Sullenger
Proximity-dependent and proximity-independent trans-splicing in mammalian cells

Susan E. Wurster and L. James Maher III
Selection and characterization of anti-NF-_B p65 RNA aptamers

MethodBack

Sabine Rudel, Andrew Flatley, Lasse Weinmann, Elisabeth Kremmer, and Gunter Meister
A multifunctional human Argonaute2-specific monoclonal antibody


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