Reviews:

Malte Beringer

Modulating the activity of the peptidyl transferase center of the ribosome
RNA 2008 14: 795-801. Published in Advance March 27, 2008 , 10.1261/rna.980308 [Abstract] [Full Text] [PDF]  

Zefeng Wang and Christopher B. Burge

Splicing regulation: From a parts list of regulatory elements to an integrated splicing code
RNA 2008 14: 802-813. Published in Advance March 27, 2008 , 10.1261/rna.876308 [Abstract] [Full Text] [PDF]  

Bioinformatics:

Jittima Piriyapongsa and I. King Jordan

Dual coding of siRNAs and miRNAs by plant transposable elements
RNA 2008 14: 814-821. Published in Advance March 26, 2008 , 10.1261/rna.916708 [Abstract] [Full Text] [PDF] Supplemental Research Data  

Reports:

Zasha Weinberg, Elizabeth E. Regulski, Ming C. Hammond, Jeffrey E. Barrick, Zizhen Yao, Walter L. Ruzzo, and Ronald R. Breaker

The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches
RNA 2008 14: 822-828. Published in Advance March 27, 2008 , 10.1261/rna.988608 [Abstract] [Full Text] [PDF] Supplemental Research Data OPEN ACCESS ARTICLE  

Guillaume Jannot, Marie-Eve L. Boisvert, Isabelle H. Banville, and Martin J. Simard

Two molecular features contribute to the Argonaute specificity for the microRNA and RNAi pathways in C. elegans
RNA 2008 14: 829-835. Published in Advance March 26, 2008 , 10.1261/rna.901908 [Abstract] [Full Text] [PDF]  

Han-Hua Liu, Xin Tian, Yan-Jie Li, Chang-Ai Wu, and Cheng-Chao Zheng

Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana
RNA 2008 14: 836-843. Published in Advance March 20, 2008 , 10.1261/rna.895308 [Abstract] [Full Text] [PDF]  

Articles:

Heidi J. Peltier and Gary J. Latham

Normalization of microRNA expression levels in quantitative RT-PCR assays: Identification of suitable reference RNA targets in normal and cancerous human solid tissues
RNA 2008 14: 844-852. Published in Advance March 28, 2008 , 10.1261/rna.939908 [Abstract] [Full Text] [PDF] Supplemental Research Data  

Emily M. Anderson, Amanda Birmingham, Scott Baskerville, Angela Reynolds, Elena Maksimova, Devin Leake, Yuriy Fedorov, Jon Karpilow, and Anastasia Khvorova

Experimental validation of the importance of seed complement frequency to siRNA specificity
RNA 2008 14: 853-861. Published in Advance March 26, 2008 , 10.1261/rna.704708 [Abstract] [Full Text] [PDF] Supplemental Research Data OPEN ACCESS ARTICLE  

Christie N. Jones, Kevin A. Wilkinson, Kimberly T. Hung, Kevin M. Weeks, and Linda L. Spremulli

Lack of secondary structure characterizes the 5' ends of mammalian mitochondrial mRNAs
RNA 2008 14: 862-871. Published in Advance March 26, 2008 , 10.1261/rna.909208 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE  

Anja M. Duursma, Martijn Kedde, Mariette Schrier, Carlos le Sage, and Reuven Agami

miR-148 targets human DNMT3b protein coding region
RNA 2008 14: 872-877. Published in Advance March 26, 2008 , 10.1261/rna.972008 [Abstract] [Full Text] [PDF]  

Graydon B. Gonsalvez, Kavita Praveen, Amanda J. Hicks, Liping Tian, and A. Gregory Matera

Sm protein methylation is dispensable for snRNP assembly in Drosophila melanogaster
RNA 2008 14: 878-887. Published in Advance March 27, 2008 , 10.1261/rna.940708 [Abstract] [Full Text] [PDF] Supplemental Research Data  

Jillian Emmons, W.H. Davin Townley-Tilson, Kristen M. Deleault, Stephen J. Skinner, Robert H. Gross, Michael L. Whitfield, and Seth A. Brooks

Identification of TTP mRNA targets in human dendritic cells reveals TTP as a critical regulator of dendritic cell maturation
RNA 2008 14: 888-902. Published in Advance March 26, 2008 , 10.1261/rna.748408 [Abstract] [Full Text] [PDF] Supplemental Research Data  

Ming-Bo Wang, Christopher A. Helliwell, Li-Min Wu, Peter M. Waterhouse, W. James Peacock, and Elizabeth S. Dennis

Hairpin RNAs derived from RNA polymerase II and polymerase III promoter-directed transgenes are processed differently in plants
RNA 2008 14: 903-913. Published in Advance March 26, 2008 , 10.1261/rna.760908 [Abstract] [Full Text] [PDF] Supplemental Research Data  

Lara Ajamian, Levon Abrahamyan, Miroslav Milev, Pavel V. Ivanov, Andreas E. Kulozik, Niels H. Gehring, and Andrew J. Mouland

Unexpected roles for UPF1 in HIV-1 RNA metabolism and translation
RNA 2008 14: 914-927. Published in Advance March 27, 2008 , 10.1261/rna.829208 [Abstract] [Full Text] [PDF] Supplemental Research Data  

Annette Hölzle, Susan Fischer, Ruth Heyer, Stefanie Schütz, Martin Zacharias, Paul Walther, Thorsten Allers, and Anita Marchfelder

Maturation of the 5S rRNA 5' end is catalyzed in vitro by the endonuclease tRNase Z in the archaeon H. volcanii
RNA 2008 14: 928-937. Published in Advance March 27, 2008 , 10.1261/rna.933208 [Abstract] [Full Text] [PDF] Supplemental Research Data  

Dominic Jaikaran, M. Duane Smith, Reza Mehdizadeh, Joan Olive, and Richard A. Collins

An important role of G638 in the cis-cleavage reaction of the Neurospora VS ribozyme revealed by a novel nucleotide analog incorporation method
RNA 2008 14: 938-949. Published in Advance March 20, 2008 , 10.1261/rna.936508 [Abstract] [Full Text] [PDF]  

Sushmit Maitra, Chu-Fang Chou, Christian A. Luber, Kyung-Yeol Lee, Matthias Mann, and Ching-Yi Chen

The AU-rich element mRNA decay-promoting activity of BRF1 is regulated by mitogen-activated protein kinase-activated protein kinase 2
RNA 2008 14: 950-959. Published in Advance March 6, 2008 , 10.1261/rna.983708 [Abstract] [Full Text] [PDF]  

Lisa Lindqvist, Hiroaki Imataka, and Jerry Pelletier

Cap-dependent eukaryotic initiation factor-mRNA interactions probed by cross-linking
RNA 2008 14: 960-969. Published in Advance March 26, 2008 , 10.1261/rna.971208 [Abstract] [Full Text] [PDF]  

Hassan Hashimi, Alena Zíková, Aswini K. Panigrahi, Kenneth D. Stuart, and Julius Lukes

TbRGG1, an essential protein involved in kinetoplastid RNA metabolism that is associated with a novel multiprotein complex
RNA 2008 14: 970-980. Published in Advance March 27, 2008 , 10.1261/rna.888808 [Abstract] [Full Text] [PDF] Supplemental Research Data  

Methods:

Dominic Dulude, Gabriel Théberge-Julien, Léa Brakier-Gingras, and Nikolaus Heveker

Selection of peptides interfering with a ribosomal frameshift in the human immunodeficiency virus type 1
RNA 2008 14: 981-991. Published in Advance March 26, 2008 , 10.1261/rna.887008 [Abstract] [Full Text] [PDF] Supplemental Research Data  

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