Table of Contents

June 2008; 14 (6)

PERSPECTIVE

  • PERSPECTIVE:

    Riboswitch effectors as protein enzyme cofactors

    • Jesse C. Cochrane
    • and Scott A. Strobel
    RNA June 2008 14:993-1002; Published in Advance April 22, 2008, doi:10.1261/rna.908408

BOOK REVIEW

  • BOOK REVIEW:

    Ribozymes and RNA Catalysis, edited by David M. Lilly and Fritz Eckstein. 2007. RSC Publishing, Cambridge, UK. ISBN (online): 978-1-84755-798-8, ISBN (print): 978-0-85404-253-1.

    • Mike Harris
    RNA June 2008 14:1003-1004; Published in Advance April 22, 2008, doi:10.1261/rna.1047008

LETTER TO THE EDITOR

  • LETTER TO THE EDITOR:

    Organization and transcriptional output of a novel mRNA-like piRNA gene (mpiR) located on mouse chromosome 10

    • Minjung Kim,
    • Bhavita Patel,
    • Kourtney E. Schroeder,
    • Abbas Raza,
    • and Jeff Dejong
    RNA June 2008 14:1005-1011; Published in Advance April 25, 2008, doi:10.1261/rna.974608

BIOINFORMATICS

  • BIOINFORMATICS:

    miRDB: A microRNA target prediction and functional annotation database with a wiki interface

    • Xiaowei Wang
    RNA June 2008 14:1012-1017; Published in Advance April 21, 2008, doi:10.1261/rna.965408

REPORT

  • REPORT:

    Potassium ions modulate a G-quadruplex-ribozyme's activity

    • Jean-Denis Beaudoin
    • and Jean-Pierre Perreault
    RNA June 2008 14:1018-1025; Published in Advance May 2, 2008, doi:10.1261/rna.963908
    OPEN ACCESS ARTICLE

ARTICLES

  • ARTICLE:

    A viral RNA competitively inhibits the antiviral endoribonuclease domain of RNase L

    • Hannah L. Townsend,
    • Babal K. Jha,
    • Jian-Qiu Han,
    • N. Karl Maluf,
    • Robert H. Silverman,
    • and David J. Barton
    RNA June 2008 14:1026-1036; Published in Advance April 21, 2008, doi:10.1261/rna.958908
  • ARTICLE:

    Selection and characterization of anti-NF-κB p65 RNA aptamers

    • Susan E. Wurster
    • and L. James Maher III
    RNA June 2008 14:1037-1047; Published in Advance April 21, 2008, doi:10.1261/rna.878908
  • ARTICLE:

    A conserved element that stabilizes the group II intron active site

    • Olga Fedorova
    • and Anna Marie Pyle
    RNA June 2008 14:1048-1056; Published in Advance April 25, 2008, doi:10.1261/rna.942308
    OPEN ACCESS ARTICLE
  • ARTICLE:

    The RNase E/G-type endoribonuclease of higher plants is located in the chloroplast and cleaves RNA similarly to the E. coli enzyme

    • Aleks Schein,
    • Sharon Sheffy-Levin,
    • Fabian Glaser,
    • and Gadi Schuster
    RNA June 2008 14:1057-1068; Published in Advance April 25, 2008, doi:10.1261/rna.907608
  • ARTICLE:

    gRNA/pre-mRNA annealing and RNA chaperone activities of RBP16

    • Michelle L. Ammerman,
    • John C. Fisk,
    • and Laurie K. Read
    RNA June 2008 14:1069-1080; Published in Advance April 25, 2008, doi:10.1261/rna.982908
  • ARTICLE:

    Proximity-dependent and proximity-independent trans-splicing in mammalian cells

    • Kristi D. Viles
    • and Bruce A. Sullenger
    RNA June 2008 14:1081-1094; Published in Advance April 25, 2008, doi:10.1261/rna.384808
  • ARTICLE:

    Analysis of genomic tRNA sets from Bacteria, Archaea, and Eukarya points to anticodon–codon hydrogen bonds as a major determinant of tRNA compositional variations

    • Ilia Targanski
    • and Vera Cherkasova
    RNA June 2008 14:1095-1109; Published in Advance April 25, 2008, doi:10.1261/rna.896108
  • ARTICLE:

    Specificity of ADAR-mediated RNA editing in newly identified targets

    • Eva M. Riedmann,
    • Sandy Schopoff,
    • Jochen C. Hartner,
    • and Michael F. Jantsch
    RNA June 2008 14:1110-1118; Published in Advance April 22, 2008, doi:10.1261/rna.923308
  • ARTICLE:

    Synthesis and characterization of mRNA cap analogs containing phosphorothioate substitutions that bind tightly to eIF4E and are resistant to the decapping pyrophosphatase DcpS

    • Joanna Kowalska,
    • Magdalena Lewdorowicz,
    • Joanna Zuberek,
    • Ewa Grudzien-Nogalska,
    • Elzbieta Bojarska,
    • Janusz Stepinski,
    • Robert E. Rhoads,
    • Edward Darzynkiewicz,
    • Richard E. Davis,
    • and Jacek Jemielity
    RNA June 2008 14:1119-1131; Published in Advance April 22, 2008, doi:10.1261/rna.990208
  • ARTICLE:

    DcpS scavenger decapping enzyme can modulate pre-mRNA splicing

    • Vincent Shen,
    • Hudan Liu,
    • Shin-Wu Liu,
    • Xinfu Jiao,
    • and Megerditch Kiledjian
    RNA June 2008 14:1132-1142; Published in Advance April 21, 2008, doi:10.1261/rna.1008208
  • ARTICLE:

    The 5e motif of eukaryotic signal recognition particle RNA contains a conserved adenosine for the binding of SRP72

    • Elena Iakhiaeva,
    • Jacek Wower,
    • Iwona K. Wower,
    • and Christian Zwieb
    RNA June 2008 14:1143-1153; Published in Advance April 25, 2008, doi:10.1261/rna.979508
  • ARTICLE:

    Structural and molecular basis for hyperspecificity of RNA aptamer to human immunoglobulin G

    • Shin Miyakawa,
    • Yusuke Nomura,
    • Taiichi Sakamoto,
    • Yoshiki Yamaguchi,
    • Koichi Kato,
    • Satoko Yamazaki,
    • and Yoshikazu Nakamura
    RNA June 2008 14:1154-1163; Published in Advance April 25, 2008, doi:10.1261/rna.1005808
  • ARTICLE:

    Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms

    • Feng Ding,
    • Shantanu Sharma,
    • Poornima Chalasani,
    • Vadim V. Demidov,
    • Natalia E. Broude,
    • and Nikolay V. Dokholyan
    RNA June 2008 14:1164-1173; Published in Advance May 2, 2008, doi:10.1261/rna.894608
  • ARTICLE:

    The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians

    • Dasaradhi Palakodeti,
    • Magda Smielewska,
    • Yi-Chien Lu,
    • Gene W. Yeo,
    • and Brenton R. Graveley
    RNA June 2008 14:1174-1186; Published in Advance May 2, 2008, doi:10.1261/rna.1085008
  • ARTICLE:

    Trypanosoma brucei RNA editing protein TbMP42 (band VI) is crucial for the endonucleolytic cleavages but not the subsequent steps of U-deletion and U-insertion

    • Julie A. Law,
    • Sean F. O'Hearn,
    • and Barbara Sollner-Webb
    RNA June 2008 14:1187-1200; Published in Advance April 25, 2008, doi:10.1261/rna.899508
  • ARTICLE:

    Nucleoside modifications modulate activation of the protein kinase PKR in an RNA structure-specific manner

    • Subba Rao Nallagatla
    • and Philip C. Bevilacqua
    RNA June 2008 14:1201-1213; Published in Advance April 21, 2008, doi:10.1261/rna.1007408
  • ARTICLE:

    Competition between the Rex1 exonuclease and the La protein affects both Trf4p-mediated RNA quality control and pre-tRNA maturation

    • Laura A. Copela,
    • Cesar F. Fernandez,
    • R. Lynn Sherrer,
    • and Sandra L. Wolin
    RNA June 2008 14:1214-1227; Published in Advance May 2, 2008, doi:10.1261/rna.1050408
  • ARTICLE:

    Single-stranded RNA facilitates nucleocapsid: APOBEC3G complex formation

    • Hal P. Bogerd
    • and Bryan R. Cullen
    RNA June 2008 14:1228-1236; Published in Advance May 2, 2008, doi:10.1261/rna.964708
  • ARTICLE:

    RNase P cleaves the adenine riboswitch and stabilizes pbuE mRNA in Bacillus subtilis

    • Elias Seif
    • and Sidney Altman
    RNA June 2008 14:1237-1243; Published in Advance April 25, 2008, doi:10.1261/rna.833408

METHOD

  • METHOD:

    A multifunctional human Argonaute2-specific monoclonal antibody

    • Sabine Rüdel,
    • Andrew Flatley,
    • Lasse Weinmann,
    • Elisabeth Kremmer,
    • and Gunter Meister
    RNA June 2008 14:1244-1253; Published in Advance April 22, 2008, doi:10.1261/rna.973808
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This Issue

June 2008; 14 (6)
Cover
  1. PERSPECTIVE
  2. BOOK REVIEW
  3. LETTER TO THE EDITOR
  4. BIOINFORMATICS
  5. REPORT
  6. ARTICLES
  7. METHOD

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