Reviews:

Jennifer A. Nelson and Olke C. Uhlenbeck

Hammerhead redux: Does the new structure fit the old biochemical data?
RNA 2008 14: 605-615. Published in Advance February 20, 2008 , 10.1261/rna.912608 [Abstract] [Full Text] [PDF]  

Bioinformatics:

Michael Hiller, Karol Szafranski, Rileen Sinha, Klaus Huse, Swetlana Nikolajewa, Philip Rosenstiel, Stefan Schreiber, Rolf Backofen, and Matthias Platzer

Assessing the fraction of short-distance tandem splice sites under purifying selection
RNA 2008 14: 616-629. Published in Advance February 11, 2008 , 10.1261/rna.883908 [Abstract] [Full Text] [PDF] Supplemental Research Data  

Jana Sperschneider and Amitava Datta

KnotSeeker: Heuristic pseudoknot detection in long RNA sequences
RNA 2008 14: 630-640. Published in Advance February 26, 2008 , 10.1261/rna.968808 [Abstract] [Full Text] [PDF]  

Reports:

Luc Bonnefond, Catherine Florentz, Richard Giegé, and Joëlle Rudinger-Thirion

Decreased aminoacylation in pathology-related mutants of mitochondrial tRNA^Tyr is associated with structural perturbations in tRNA architecture
RNA 2008 14: 641-648. Published in Advance February 11, 2008 , 10.1261/rna.938108 [Abstract] [Full Text] [PDF]  

Jonathan Esguerra, Jonas Warringer, and Anders Blomberg

Functional importance of individual rRNA 2'-O-ribose methylations revealed by high-resolution phenotyping
RNA 2008 14: 649-656. Published in Advance February 6, 2008 , 10.1261/rna.845808 [Abstract] [Full Text] [PDF]  

Vikram Pattanayak, Lida K. Gifford, Ponzy Lu, and Alan M. Gewirtz

Observed versus predicted structure of fluorescent self-quenching reporter molecules (SQRM): Caveats with respect to the use of "stem–loop" oligonucleotides as probes for mRNA folding
RNA 2008 14: 657-665. [Abstract] [Full Text] [PDF]  

Marie Gustavsson and Hans Ronne

Evidence that tRNA modifying enzymes are important in vivo targets for 5-fluorouracil in yeast
RNA 2008 14: 666-674. Published in Advance February 26, 2008 , 10.1261/rna.966208 [Abstract] [Full Text] [PDF]  

Articles:

Colby D Stoddard, Sunny D. Gilbert, and Robert T. Batey

Ligand-dependent folding of the three-way junction in the purine riboswitch
RNA 2008 14: 675-684. Published in Advance February 11, 2008 , 10.1261/rna.736908 [Abstract] [Full Text] [PDF]  

Michelle M. Meyer, Adam Roth, Stephanie M. Chervin, George A. Garcia, and Ronald R. Breaker

Confirmation of a second natural preQ₁ aptamer class in Streptococcaceae bacteria
RNA 2008 14: 685-695. Published in Advance February 27, 2008 , 10.1261/rna.937308 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE  

Sushuang Zheng and Stewart Shuman

Structure–function analysis of vaccinia virus mRNA cap (guanine-N7) methyltransferase
RNA 2008 14: 696-705. Published in Advance February 6, 2008 , 10.1261/rna.928208 [Abstract] [Full Text] [PDF]  

Rune Thomsen, Cyril Saguez, Tommy Nasser, and Torben Heick Jensen

General, rapid, and transcription-dependent fragmentation of nucleolar antigens in S. cerevisiae mRNA export mutants
RNA 2008 14: 706-716. Published in Advance February 7, 2008 , 10.1261/rna.718708 [Abstract] [Full Text] [PDF]  

Alexey G. Vitreschak, Andrei A. Mironov, Vassily A. Lyubetsky, and Mikhail S. Gelfand

Comparative genomic analysis of T-box regulatory systems in bacteria
RNA 2008 14: 717-735. [Abstract] [Full Text] [PDF] Supplemental Research Data  

Patricia Bouchard, Julie Lacroix-Labonté, Geneviève Desjardins, Philipe Lampron, Véronique Lisi, Sébastien Lemieux, François Major, and Pascale Legault

Role of SLV in SLI substrate recognition by the Neurospora VS ribozyme
RNA 2008 14: 736-748. Published in Advance February 26, 2008 , 10.1261/rna.824308 [Abstract] [Full Text] [PDF]  

Alexandre Smirnov, Ivan Tarassov, Anne-Marie Mager-Heckel, Michel Letzelter, Robert P. Martin, Igor A. Krasheninnikov, and Nina Entelis

Two distinct structural elements of 5S rRNA are needed for its import into human mitochondria
RNA 2008 14: 749-759. Published in Advance February 26, 2008 , 10.1261/rna.952208 [Abstract] [Full Text] [PDF]  

Jonathan Pettitt, Berndt Müller, Ian Stansfield, and Bernadette Connolly

Spliced leader trans-splicing in the nematode Trichinella spiralis uses highly polymorphic, noncanonical spliced leaders
RNA 2008 14: 760-770. Published in Advance February 6, 2008 , 10.1261/rna.948008 [Abstract] [Full Text] [PDF]  

Jeff D. Thomas, Lizalynn M. Dias, and Gregg J. Johannes

Translational repression during chronic hypoxia is dependent on glucose levels
RNA 2008 14: 771-781. Published in Advance February 11, 2008 , 10.1261/rna.857308 [Abstract] [Full Text] [PDF]  

Sanjaya C. Abeysirigunawardena and Christine S. Chow

pH-dependent structural changes of helix 69 from Escherichia coli 23S ribosomal RNA
RNA 2008 14: 782-792. Published in Advance February 11, 2008 , 10.1261/rna.779908 [Abstract] [Full Text] [PDF]  

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