Table of Contents

REVIEW OF THE CECH SYMPOSIUM

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REVIEW OF THE CECH SYMPOSIUM:
The Cech Symposium: A celebration of 25 years of ribozymes, 10 years of TERT, and 60 years of Tom
- Quentin Vicens,
- Mary Ann Allen,
- Sunny D. Gilbert,
- Boris Reznik,
- Anne R. Gooding,
- and Robert T. Batey
RNA March 2008 14:397-403; Published in Advance January 18, 2008, doi:10.1261/rna.910008
OPEN ACCESS ARTICLE

MINI-REVIEW

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MINI-REVIEW:
Trading translation with RNA-binding proteins
- Irina Abaza
- and Fátima Gebauer
RNA March 2008 14:404-409; Published in Advance January 22, 2008, doi:10.1261/rna.848208

BIOINFORMATICS

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BIOINFORMATICS:
From knotted to nested RNA structures: A variety of computational methods for pseudoknot removal
- Sandra Smit,
- Kristian Rother,
- Jaap Heringa,
- and Rob Knight
RNA March 2008 14:410-416; Published in Advance January 29, 2008, doi:10.1261/rna.881308

REPORTS

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REPORT:
Loss of mir-146a function in hormone-refractory prostate cancer
- Shi-Lung Lin,
- Angela Chiang,
- Donald Chang,
- and Shao-Yao Ying
RNA March 2008 14:417-424; Published in Advance January 3, 2008, doi:10.1261/rna.874808
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REPORT:
Identification of PCBP2, a facilitator of IRES-mediated translation, as a novel constituent of stress granules and processing bodies
- Ken Fujimura,
- Fumi Kano,
- and Masayuki Murata
RNA March 2008 14:425-431; Published in Advance January 3, 2008, doi:10.1261/rna.780708
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REPORT:
MicroRNA expression in the adult mouse central nervous system
- Mads Bak,
- Asli Silahtaroglu,
- Morten Møller,
- Mette Christensen,
- Martin F. Rath,
- Boris Skryabin,
- Niels Tommerup,
- and Sakari Kauppinen
RNA March 2008 14:432-444; Published in Advance January 29, 2008, doi:10.1261/rna.783108
OPEN ACCESS ARTICLE
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REPORT:
Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum
- Brook Pyhtila,
- Tianli Zheng,
- Patrick J. Lager,
- Jack D. Keene,
- Mary C. Reedy,
- and Christopher V. Nicchitta
RNA March 2008 14:445-453; Published in Advance January 11, 2008, doi:10.1261/rna.721108
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REPORT:
Translational activation by the noncoding RNA DsrA involves alternative RNase III processing in the rpoS 5′-leader
- Armin Resch,
- Taras Afonyushkin,
- Tania B. Lombo,
- Kenneth J. McDowall,
- Udo Bläsi,
- and Vladimir R. Kaberdin
RNA March 2008 14:454-459; Published in Advance January 11, 2008, doi:10.1261/rna.603108
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REPORT:
Mutation from guanine to adenine in 25S rRNA at the position equivalent to E. coli A2058 does not confer erythromycin sensitivity in Sacchromyces cerevisae
- Ananth S. Bommakanti,
- Lasse Lindahl,
- and Janice M. Zengel
RNA March 2008 14:460-464; Published in Advance January 24, 2008, doi:10.1261/rna.786408

METHODS

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METHOD:
Receptor-mediated delivery of siRNAs by tethered nucleic acid base-paired interactions
- Kexiong Zhang,
- Qiaoqiao Wang,
- Yanhua Xie,
- Gil Mor,
- Emanuela Sega,
- Philip S. Low,
- and Yingqun Huang
RNA March 2008 14:577-583; Published in Advance January 24, 2008, doi:10.1261/rna.739308
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METHOD:
A novel sequence-specific RNA quantification method using nicking endonuclease, dual-labeled fluorescent DNA probe, and conformation-interchangeable oligo-DNA
- Kazufumi Hosoda,
- Tomoaki Matsuura,
- Hiroshi Kita,
- Norikazu Ichihashi,
- Koji Tsukada,
- Itaru Urabe,
- and Tetsuya Yomo
RNA March 2008 14:584-592; Published in Advance January 29, 2008, doi:10.1261/rna.761708
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METHOD:
An efficient in vitro translation system from mammalian cells lacking the translational inhibition caused by eIF2 phosphorylation
- Vladimir V. Zeenko,
- Chuanping Wang,
- Mithu Majumder,
- Anton A. Komar,
- Martin D. Snider,
- William C. Merrick,
- Randal J. Kaufman,
- and Maria Hatzoglou
RNA March 2008 14:593-602; Published in Advance January 29, 2008, doi:10.1261/rna.825008

REVIEW OF THE CECH SYMPOSIUM

The Cech Symposium: A celebration of 25 years of ribozymes, 10 years of TERT, and 60 years of Tom

MINI-REVIEW

Trading translation with RNA-binding proteins

BIOINFORMATICS

From knotted to nested RNA structures: A variety of computational methods for pseudoknot removal

REPORTS

Loss of mir-146a function in hormone-refractory prostate cancer

Identification of PCBP2, a facilitator of IRES-mediated translation, as a novel constituent of stress granules and processing bodies

MicroRNA expression in the adult mouse central nervous system

Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum

Translational activation by the noncoding RNA DsrA involves alternative RNase III processing in the rpoS 5′-leader

Mutation from guanine to adenine in 25S rRNA at the position equivalent to E. coli A2058 does not confer erythromycin sensitivity in Sacchromyces cerevisae

ARTICLES

RNA backbone: Consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

Functional domains of Drosophila UNR in translational control

Myo2p, a class V myosin in budding yeast, associates with a large ribonucleic acid–protein complex that contains mRNAs and subunits of the RNA-processing body

Duality of polynucleotide substrates for Phi29 DNA polymerase: 3′→5′ RNase activity of the enzyme

The RNA binding protein Hfq interacts specifically with tRNAs

An RNA molecule that specifically inhibits G-protein-coupled receptor kinase 2 in vitro

Sequence-specific activation of TAK1-D by short double-stranded RNAs induces apoptosis in NCI-H460 cells

PNPase is a key player in the regulation of small RNAs that control the expression of outer membrane proteins

Improved polymerase ribozyme efficiency on hydrophobic assemblies

Proximity of the poly(A)-binding protein to a premature termination codon inhibits mammalian nonsense-mediated mRNA decay

METHODS

Receptor-mediated delivery of siRNAs by tethered nucleic acid base-paired interactions

A novel sequence-specific RNA quantification method using nicking endonuclease, dual-labeled fluorescent DNA probe, and conformation-interchangeable oligo-DNA

An efficient in vitro translation system from mammalian cells lacking the translational inhibition caused by eIF2 phosphorylation

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