Table of Contents

BIOINFORMATICS

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BIOINFORMATICS:
Early evolution of histone mRNA 3′ end processing
- Marcela Dávila López
- and Tore Samuelsson
RNA January 2008 14:1-10; Published in Advance November 12, 2007, doi:10.1261/rna.782308

ARTICLES

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ARTICLE:
Three essential and conserved regions of the group II intron are proximal to the 5′-splice site
- Alexandre de Lencastre
- and Anna Marie Pyle
RNA January 2008 14:11-24; Published in Advance November 26, 2007, doi:10.1261/rna.774008
OPEN ACCESS ARTICLE
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ARTICLE:
Chemical basis of glycine riboswitch cooperativity
- Miyun Kwon
- and Scott A. Strobel
RNA January 2008 14:25-34; Published in Advance November 27, 2007, doi:10.1261/rna.771608
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ARTICLE:
Systematic evaluation of microRNA processing patterns in tissues, cell lines, and tumors
- Eun Joo Lee,
- Myungwon Baek,
- Yuriy Gusev,
- Daniel J. Brackett,
- Gerard J. Nuovo,
- and Thomas D. Schmittgen
RNA January 2008 14:35-42; Published in Advance November 19, 2007, doi:10.1261/rna.804508
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ARTICLE:
Minimal and extended hammerheads utilize a similar dynamic reaction mechanism for catalysis
- Jennifer A. Nelson
- and Olke C. Uhlenbeck
RNA January 2008 14:43-54; Published in Advance November 12, 2007, doi:10.1261/rna.717908
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ARTICLE:
Mutational inhibition of ligation in the hairpin ribozyme: Substitutions of conserved nucleobases A9 and A10 destabilize tertiary structure and selectively promote cleavage
- Snigdha Gaur,
- Joyce E. Heckman,
- and John M. Burke
RNA January 2008 14:55-65; Published in Advance November 12, 2007, doi:10.1261/rna.716108
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ARTICLE:
Sus1, Sac3, and Thp1 mediate post-transcriptional tethering of active genes to the nuclear rim as well as to non-nascent mRNP
- Julia A. Chekanova,
- Katharine C. Abruzzi,
- Michael Rosbash,
- and Dmitry A. Belostotsky
RNA January 2008 14:66-77; Published in Advance November 14, 2007, doi:10.1261/rna.764108
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ARTICLE:
Transposition of two amino acids changes a promiscuous RNA binding protein into a sequence-specific RNA binding protein
- Stephen M. Garrey,
- Danielle M. Cass,
- Anica M. Wandler,
- Mary S. Scanlan,
- and J. Andrew Berglund
RNA January 2008 14:78-88; Published in Advance November 13, 2007, doi:10.1261/rna.633808
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ARTICLE:
Screening for engineered neomycin riboswitches that control translation initiation
- Julia E. Weigand,
- Martin Sanchez,
- Ewald-Bernd Gunnesch,
- Sabrina Zeiher,
- Renee Schroeder,
- and Beatrix Suess
RNA January 2008 14:89-97; Published in Advance November 13, 2007, doi:10.1261/rna.772408
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ARTICLE:
The methyltransferase YfgB/RlmN is responsible for modification of adenosine 2503 in 23S rRNA
- Seok-Ming Toh,
- Liqun Xiong,
- Taeok Bae,
- and Alexander S. Mankin
RNA January 2008 14:98-106; Published in Advance November 19, 2007, doi:10.1261/rna.814408
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ARTICLE:
Degradation of hypomodified tRNA_i^Met in vivo involves RNA-dependent ATPase activity of the DExH helicase Mtr4p
- Xuying Wang,
- Huijue Jia,
- Eckhard Jankowsky,
- and James T. Anderson
RNA January 2008 14:107-116; Published in Advance November 13, 2007, doi:10.1261/rna.808608
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ARTICLE:
Identification and characterization of a tRNA decoding the rare AUA codon in Haloarcula marismortui
- Caroline Köhrer,
- Gayathri Srinivasan,
- Debabrata Mandal,
- Bibekanand Mallick,
- Zhumur Ghosh,
- Jayprokas Chakrabarti,
- and Uttam L. Rajbhandary
RNA January 2008 14:117-126; Published in Advance November 12, 2007, doi:10.1261/rna.795508
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ARTICLE:
Structural basis of a ribozyme's thermostability: P1–L9 interdomain interaction in RNase P RNA
- Michal Marszalkowski,
- Dagmar K. Willkomm,
- and Roland K. Hartmann
RNA January 2008 14:127-133; Published in Advance November 12, 2007, doi:10.1261/rna.762508
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ARTICLE:
The 3′ cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation
- Krzysztof Treder,
- Elizabeth L. Pettit Kneller,
- Edwards M. Allen,
- Zhaohui Wang,
- Karen S. Browning,
- and W. Allen Miller
RNA January 2008 14:134-147; Published in Advance November 19, 2007, doi:10.1261/rna.777308
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ARTICLE:
Eukaryotic ribosomal RNA determinants of aminoglycoside resistance and their role in translational fidelity
- Hua Fan-Minogue
- and David M. Bedwell
RNA January 2008 14:148-157; Published in Advance November 14, 2007, doi:10.1261/rna.805208
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ARTICLE:
Identification of yeast tRNA Um₄₄ 2′-O-methyltransferase (Trm44) and demonstration of a Trm44 role in sustaining levels of specific tRNA^Ser species
- Lakmal Kotelawala,
- Elizabeth J. Grayhack,
- and Eric M. Phizicky
RNA January 2008 14:158-169; Published in Advance November 19, 2007, doi:10.1261/rna.811008

METHODS

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METHOD:
Visualizing the splicing of single pre-mRNA molecules in whole cell extract
- Daniel J. Crawford,
- Aaron A. Hoskins,
- Larry J. Friedman,
- Jeff Gelles,
- and Melissa J. Moore
RNA January 2008 14:170-179; Published in Advance November 19, 2007, doi:10.1261/rna.794808
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METHOD:
Use of DNAzymes for site-specific analysis of ribonucleotide modifications
- Martin Hengesbach,
- Madeleine Meusburger,
- Frank Lyko,
- and Mark Helm
RNA January 2008 14:180-187; Published in Advance November 12, 2007, doi:10.1261/rna.742708
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METHOD:
A novel chromatography system to isolate active ribosomes from pathogenic bacteria
- Bruce A. Maguire,
- Lillian M. Wondrack,
- Leonard G. Contillo,
- and Zuoyu Xu
RNA January 2008 14:188-195; Published in Advance November 12, 2007, doi:10.1261/rna.692408

BIOINFORMATICS

Early evolution of histone mRNA 3′ end processing

ARTICLES

Three essential and conserved regions of the group II intron are proximal to the 5′-splice site

Chemical basis of glycine riboswitch cooperativity

Systematic evaluation of microRNA processing patterns in tissues, cell lines, and tumors

Minimal and extended hammerheads utilize a similar dynamic reaction mechanism for catalysis

Mutational inhibition of ligation in the hairpin ribozyme: Substitutions of conserved nucleobases A9 and A10 destabilize tertiary structure and selectively promote cleavage

Sus1, Sac3, and Thp1 mediate post-transcriptional tethering of active genes to the nuclear rim as well as to non-nascent mRNP

Transposition of two amino acids changes a promiscuous RNA binding protein into a sequence-specific RNA binding protein

Screening for engineered neomycin riboswitches that control translation initiation

The methyltransferase YfgB/RlmN is responsible for modification of adenosine 2503 in 23S rRNA

Degradation of hypomodified tRNA_i^Met in vivo involves RNA-dependent ATPase activity of the DExH helicase Mtr4p

Identification and characterization of a tRNA decoding the rare AUA codon in Haloarcula marismortui

Structural basis of a ribozyme's thermostability: P1–L9 interdomain interaction in RNase P RNA

The 3′ cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation

Eukaryotic ribosomal RNA determinants of aminoglycoside resistance and their role in translational fidelity

Identification of yeast tRNA Um₄₄ 2′-O-methyltransferase (Trm44) and demonstration of a Trm44 role in sustaining levels of specific tRNA^Ser species

METHODS

Visualizing the splicing of single pre-mRNA molecules in whole cell extract

Use of DNAzymes for site-specific analysis of ribonucleotide modifications

A novel chromatography system to isolate active ribosomes from pathogenic bacteria

This Issue

Current Issue

Table of Contents

BIOINFORMATICS

Early evolution of histone mRNA 3′ end processing

ARTICLES

Three essential and conserved regions of the group II intron are proximal to the 5′-splice site

Chemical basis of glycine riboswitch cooperativity

Systematic evaluation of microRNA processing patterns in tissues, cell lines, and tumors

Minimal and extended hammerheads utilize a similar dynamic reaction mechanism for catalysis

Mutational inhibition of ligation in the hairpin ribozyme: Substitutions of conserved nucleobases A9 and A10 destabilize tertiary structure and selectively promote cleavage

Sus1, Sac3, and Thp1 mediate post-transcriptional tethering of active genes to the nuclear rim as well as to non-nascent mRNP

Transposition of two amino acids changes a promiscuous RNA binding protein into a sequence-specific RNA binding protein

Screening for engineered neomycin riboswitches that control translation initiation

The methyltransferase YfgB/RlmN is responsible for modification of adenosine 2503 in 23S rRNA

Degradation of hypomodified tRNAiMet in vivo involves RNA-dependent ATPase activity of the DExH helicase Mtr4p

Identification and characterization of a tRNA decoding the rare AUA codon in Haloarcula marismortui

Structural basis of a ribozyme's thermostability: P1–L9 interdomain interaction in RNase P RNA

The 3′ cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation

Eukaryotic ribosomal RNA determinants of aminoglycoside resistance and their role in translational fidelity

Identification of yeast tRNA Um44 2′-O-methyltransferase (Trm44) and demonstration of a Trm44 role in sustaining levels of specific tRNASer species

METHODS

Visualizing the splicing of single pre-mRNA molecules in whole cell extract

Use of DNAzymes for site-specific analysis of ribonucleotide modifications

A novel chromatography system to isolate active ribosomes from pathogenic bacteria

This Issue

Current Issue

Degradation of hypomodified tRNA_i^Met in vivo involves RNA-dependent ATPase activity of the DExH helicase Mtr4p

Identification of yeast tRNA Um₄₄ 2′-O-methyltransferase (Trm44) and demonstration of a Trm44 role in sustaining levels of specific tRNA^Ser species