Table of Contents

August 2007; 13 (8)

REVIEWS

  • REVIEW:

    RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria

    • Charles Yanofsky
    RNA August 2007 13:1141-1154; Published in Advance June 29, 2007, doi:10.1261/rna.620507
  • REVIEW:

    The impact of alternative splicing in vivo: Mouse models show the way

    • Tarik Möröy
    • and Florian Heyd
    RNA August 2007 13:1155-1171; Published in Advance June 11, 2007, doi:10.1261/rna.554607

LETTERS TO THE EDITOR

  • LETTER TO THE EDITOR:

    miR-200b mediates post-transcriptional repression of ZFHX1B

    • Nanna Rønbjerg Christoffersen,
    • Asli Silahtaroglu,
    • Ulf Andersson Ørom,
    • Sakari Kauppinen,
    • and Anders H. Lund
    RNA August 2007 13:1172-1178; Published in Advance June 21, 2007, doi:10.1261/rna.586807
  • LETTER TO THE EDITOR:

    Adipocyte differentiation induced using nonspecific siRNA controls in cultured human mesenchymal stem cells

    • Yunhe Xu,
    • Sayed-Hadi Mirmalek-Sani,
    • Feng Lin,
    • Junlong Zhang,
    • and Richard O.C. Oreffo
    RNA August 2007 13:1179-1183; Published in Advance June 7, 2007, doi:10.1261/rna.527207

BIOINFORMATICS

  • BIOINFORMATICS:

    Mamit-tRNA, a database of mammalian mitochondrial tRNA primary and secondary structures

    • Joern Pütz,
    • Bruno Dupuis,
    • Marie Sissler,
    • and Catherine Florentz
    RNA August 2007 13:1184-1190; Published in Advance June 21, 2007, doi:10.1261/rna.588407

REPORT

  • REPORT:

    Efficiency of a self-aminoacylating ribozyme: Effect of the length and base-composition of its 3′ extension

    • Jean Lehmann,
    • Amy Reichel,
    • Axel Buguin,
    • and Albert Libchaber
    RNA August 2007 13:1191-1197; Published in Advance June 7, 2007, doi:10.1261/rna.500907

ARTICLES

  • ARTICLE:

    Isolation of microRNA targets by miRNP immunopurification

    • George Easow,
    • Aurelio A. Teleman,
    • and Stephen M. Cohen
    RNA August 2007 13:1198-1204; Published in Advance June 25, 2007, doi:10.1261/rna.563707
  • ARTICLE:

    Low specificity of metal ion binding in the metal ion core of a folded RNA

    • Kevin J. Travers,
    • Nathan Boyd,
    • and Daniel Herschlag
    RNA August 2007 13:1205-1213; Published in Advance July 6, 2007, doi:10.1261/rna.566007
  • ARTICLE:

    Repression of α-actinin SM exon splicing by assisted binding of PTB to the polypyrimidine tract

    • Arianne J. Matlin,
    • Justine Southby,
    • Clare Gooding,
    • and Christopher W.J. Smith
    RNA August 2007 13:1214-1223; Published in Advance June 25, 2007, doi:10.1261/rna.219607
    OPEN ACCESS ARTICLE
  • ARTICLE:

    Somatodendritic microRNAs identified by laser capture and multiplex RT-PCR

    • Min-Jeong Kye,
    • Tsunglin Liu,
    • Sasha F. Levy,
    • Nan Lan Xu,
    • Benjamin B. Groves,
    • Richard Bonneau,
    • Kaiqin Lao,
    • and Kenneth S. Kosik
    RNA August 2007 13:1224-1234; Published in Advance June 25, 2007, doi:10.1261/rna.480407
  • ARTICLE:

    The C-terminal domain of T4 RNA ligase 1 confers specificity for tRNA repair

    • Li Kai Wang,
    • Jayakrishnan Nandakumar,
    • Beate Schwer,
    • and Stewart Shuman
    RNA August 2007 13:1235-1244; Published in Advance June 21, 2007, doi:10.1261/rna.591807
  • ARTICLE:

    A conserved modified wobble nucleoside (mcm5s2U) in lysyl-tRNA is required for viability in yeast

    • Glenn R. Björk,
    • Bo Huang,
    • Olof P. Persson,
    • and Anders S. Byström
    RNA August 2007 13:1245-1255; Published in Advance June 25, 2007, doi:10.1261/rna.558707
  • ARTICLE:

    A loop–loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control

    • Simon Blouin
    • and Daniel A. Lafontaine
    RNA August 2007 13:1256-1267; Published in Advance June 21, 2007, doi:10.1261/rna.560307
  • ARTICLE:

    Transitivity in Arabidopsis can be primed, requires the redundant action of the antiviral Dicer-like 4 and Dicer-like 2, and is compromised by viral-encoded suppressor proteins

    • Guillaume Moissiard,
    • Eneida Abreu Parizotto,
    • Christophe Himber,
    • and Olivier Voinnet
    RNA August 2007 13:1268-1278; Published in Advance June 25, 2007, doi:10.1261/rna.541307
  • ARTICLE:

    Testing constraints on rRNA bases that make nonsequence-specific contacts with the codon•anticodon complex in the ribosomal A site

    • Dwayne L. Taliaferro
    • and Philip J. Farabaugh
    RNA August 2007 13:1279-1286; Published in Advance June 25, 2007, doi:10.1261/rna.552007
  • ARTICLE:

    hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c

    • Caroline Paradis,
    • Philippe Cloutier,
    • Lulzim Shkreta,
    • Johanne Toutant,
    • Klaus Klarskov,
    • and Benoit Chabot
    RNA August 2007 13:1287-1300; Published in Advance June 4, 2007, doi:10.1261/rna.403607
  • ARTICLE:

    Effect of base modifications on structure, thermodynamic stability, and gene silencing activity of short interfering RNA

    • Katarzyna Sipa,
    • Elzbieta Sochacka,
    • Julia Kazmierczak-Baranska,
    • Maria Maszewska,
    • Magdalena Janicka,
    • Genowefa Nowak,
    • and Barbara Nawrot
    RNA August 2007 13:1301-1316; Published in Advance June 21, 2007, doi:10.1261/rna.538907
  • ARTICLE:

    Using 5′-PTMs to repair mutant β-globin transcripts

    • Monique N. Kierlin-Duncan
    • and Bruce A. Sullenger
    RNA August 2007 13:1317-1327; Published in Advance June 7, 2007, doi:10.1261/rna.525607
  • ARTICLE:

    NRF IRES activity is mediated by RNA binding protein JKTBP1 and a 14-nt RNA element

    • Marc René Reboll,
    • André Oumard,
    • Aniko Carla Gazdag,
    • Isabelle Renger,
    • Birgit Ritter,
    • Michael Schwarzer,
    • Hansjoerg Hauser,
    • Monika Wood,
    • Michiyuki Yamada,
    • Klaus Resch,
    • and Mahtab Nourbakhsh
    RNA August 2007 13:1328-1340; Published in Advance June 25, 2007, doi:10.1261/rna.545407
  • ARTICLE:

    HIV-2 RNA dimerization is regulated by intramolecular interactions in vitro

    • Tayyba T. Baig,
    • Jean-Marc Lanchy,
    • and J. Stephen Lodmell
    RNA August 2007 13:1341-1354; Published in Advance June 25, 2007, doi:10.1261/rna.483807
  • ARTICLE:

    Cold-stress-induced de novo expression of infC and role of IF3 in cold-shock translational bias

    • Anna Maria Giuliodori,
    • Anna Brandi,
    • Mara Giangrossi,
    • Claudio O. Gualerzi,
    • and Cynthia L. Pon
    RNA August 2007 13:1355-1365; Published in Advance June 25, 2007, doi:10.1261/rna.455607
  • ARTICLE:

    Differential factor requirement to assemble translation initiation complexes at the alternative start codons of foot-and-mouth disease virus RNA

    • Dmitri E. Andreev,
    • Olga Fernandez-Miragall,
    • Jorge Ramajo,
    • Sergey E. Dmitriev,
    • Ilya M. Terenin,
    • Encarna Martinez-Salas,
    • and Ivan N. Shatsky
    RNA August 2007 13:1366-1374; Published in Advance June 25, 2007, doi:10.1261/rna.469707

METHODS

  • METHOD:

    A more efficient RNAi inducible system for tight regulation of gene expression in mammalian cells and xenograft animals

    • Jing Zhang,
    • Cuiying Wang,
    • Ning Ke,
    • Josh Bliesath,
    • John Chionis,
    • Qiuchen S. He,
    • Qi-xiang Li,
    • Jon E. Chatterton,
    • Flossie Wong-Staal,
    • and Demin Zhou
    RNA August 2007 13:1375-1383; Published in Advance July 6, 2007, doi:10.1261/rna.520707
  • METHOD:

    Improved native affinity purification of RNA

    • Robert T. Batey
    • and Jeffrey S. Kieft
    RNA August 2007 13:1384-1389; Published in Advance June 4, 2007, doi:10.1261/rna.528007
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This Issue

August 2007; 13 (8)
Cover
  1. REVIEWS
  2. LETTERS TO THE EDITOR
  3. BIOINFORMATICS
  4. REPORT
  5. ARTICLES
  6. METHODS

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