Table of Contents

December 2007; 13 (12)

LETTERS TO THE EDITOR

  • LETTER TO THE EDITOR:

    Dissecting RNA chaperone activity

    • Lukas Rajkowitsch
    • and Renée Schroeder
    RNA December 2007 13:2053-2060; Published in Advance September 27, 2007, doi:10.1261/rna.671807
    OPEN ACCESS ARTICLE
  • LETTER TO THE EDITOR:

    Plastid mRNAs are neither spliced nor edited in maize and cauliflower mitochondrial in organello systems

    • Nina Bolle,
    • Inga Hinrichsen,
    • and Frank Kempken
    RNA December 2007 13:2061-2065; Published in Advance October 19, 2007, doi:10.1261/rna.758307

BIOINFORMATICS

  • BIOINFORMATICS:

    Evolution of small nuclear RNAs in S. cerevisiae, C. albicans, and other hemiascomycetous yeasts

    • Quinn M. Mitrovich
    • and Christine Guthrie
    RNA December 2007 13:2066-2080; Published in Advance October 23, 2007, doi:10.1261/rna.766607
  • BIOINFORMATICS:

    miRRim: A novel system to find conserved miRNAs with high sensitivity and specificity

    • Goro Terai,
    • Takashi Komori,
    • Kiyoshi Asai,
    • and Taishin Kin
    RNA December 2007 13:2081-2090; Published in Advance October 24, 2007, doi:10.1261/rna.655107

REPORTS

  • REPORT:

    Thiostrepton inhibition of tRNA delivery to the ribosome

    • Ruben L. Gonzalez, Jr,
    • Steven Chu,
    • and Joseph D. Puglisi
    RNA December 2007 13:2091-2097; Published in Advance October 19, 2007, doi:10.1261/rna.499407
  • REPORT:

    The 1.3 Å resolution structure of the RNA tridecamer r(GCGUUUGAAACGC): Metal ion binding correlates with base unstacking and groove contraction

    • Youri Timsit
    • and Sophie Bombard
    RNA December 2007 13:2098-2107; Published in Advance October 16, 2007, doi:10.1261/rna.730207
  • REPORT:

    The RNA binding protein RNPS1 alleviates ASF/SF2 depletion-induced genomic instability

    • Xialu Li,
    • Tianhui Niu,
    • and James L. Manley
    RNA December 2007 13:2108-2115; Published in Advance October 24, 2007, doi:10.1261/rna.734407

ARTICLES

  • ARTICLE:

    Roles of the negatively charged N-terminal extension of Saccharomyces cerevisiae ribosomal protein S5 revealed by characterization of a yeast strain containing human ribosomal protein S5

    • Oleksandr Galkin,
    • Amber A. Bentley,
    • Sujatha Gupta,
    • Beth-Ann Compton,
    • Barsanjit Mazumder,
    • Terri Goss Kinzy,
    • William C. Merrick,
    • Maria Hatzoglou,
    • Tatyana V. Pestova,
    • Christopher U.T. Hellen,
    • and Anton A. Komar
    RNA December 2007 13:2116-2128; Published in Advance September 27, 2007, doi:10.1261/rna.688207
  • ARTICLE:

    A bipartite U1 site represses U1A expression by synergizing with PIE to inhibit nuclear polyadenylation

    • Fei Guan,
    • Rose M. Caratozzolo,
    • Rafal Goraczniak,
    • Eric S. Ho,
    • and Samuel I. Gunderson
    RNA December 2007 13:2129-2140; Published in Advance October 17, 2007, doi:10.1261/rna.756707
  • ARTICLE:

    In vitro dimerization of human immunodeficiency virus type 1 (HIV-1) spliced RNAs

    • Lucile Sinck,
    • Delphine Richer,
    • Jane Howard,
    • Marina Alexander,
    • Damian F.J. Purcell,
    • Roland Marquet,
    • and Jean-Christophe Paillart
    RNA December 2007 13:2141-2150; Published in Advance October 9, 2007, doi:10.1261/rna.678307
  • ARTICLE:

    The wobble hypothesis revisited: Uridine-5-oxyacetic acid is critical for reading of G-ending codons

    • S. Joakim Näsvall,
    • Peng Chen,
    • and Glenn R. Björk
    RNA December 2007 13:2151-2164; Published in Advance October 17, 2007, doi:10.1261/rna.731007
  • ARTICLE:

    Nop9 is an RNA binding protein present in pre-40S ribosomes and required for 18S rRNA synthesis in yeast

    • Emma Thomson,
    • Juri Rappsilber,
    • and David Tollervey
    RNA December 2007 13:2165-2174; Published in Advance October 23, 2007, doi:10.1261/rna.747607
    OPEN ACCESS ARTICLE
  • ARTICLE:

    Single-molecule mechanical unfolding and folding of a pseudoknot in human telomerase RNA

    • Gang Chen,
    • Jin-Der Wen,
    • and Ignacio Tinoco, Jr
    RNA December 2007 13:2175-2188; Published in Advance October 24, 2007, doi:10.1261/rna.676707
  • ARTICLE:

    Wild-type is the optimal sequence of the HDV ribozyme under cotranscriptional conditions

    • Durga M. Chadalavada,
    • Andrea L. Cerrone-Szakal,
    • and Philip C. Bevilacqua
    RNA December 2007 13:2189-2201; Published in Advance October 23, 2007, doi:10.1261/rna.778107
  • ARTICLE:

    Ligand-induced folding of the guanine-sensing riboswitch is controlled by a combined predetermined–induced fit mechanism

    • Otmar M. Ottink,
    • Sumientra M. Rampersad,
    • Marco Tessari,
    • Guido J.R. Zaman,
    • Hans A. Heus,
    • and Sybren S. Wijmenga
    RNA December 2007 13:2202-2212; Published in Advance October 24, 2007, doi:10.1261/rna.635307
  • ARTICLE:

    An Hfq-like protein in archaea: Crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii

    • Jesper S. Nielsen,
    • Andreas Bøggild,
    • Christian B.F. Andersen,
    • Gorm Nielsen,
    • Anders Boysen,
    • Ditlev E. Brodersen,
    • and Poul Valentin-Hansen
    RNA December 2007 13:2213-2223; Published in Advance October 24, 2007, doi:10.1261/rna.689007
  • ARTICLE:

    Human ribosomal protein L13a is dispensable for canonical ribosome function but indispensable for efficient rRNA methylation

    • Sujan Chaudhuri,
    • Keyur Vyas,
    • Purvi Kapasi,
    • Anton A. Komar,
    • Jonathan D. Dinman,
    • Sailen Barik,
    • and Barsanjit Mazumder
    RNA December 2007 13:2224-2237; Published in Advance October 5, 2007, doi:10.1261/rna.694007
  • ARTICLE:

    MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T

    • M. Bryan Warf
    • and J. Andrew Berglund
    RNA December 2007 13:2238-2251; Published in Advance October 17, 2007, doi:10.1261/rna.610607
  • ARTICLE:

    A dynamic bulge in the U6 RNA internal stem–loop functions in spliceosome assembly and activation

    • C. Joel McManus,
    • Matthew L. Schwartz,
    • Samuel E. Butcher,
    • and David A. Brow
    RNA December 2007 13:2252-2265; Published in Advance October 9, 2007, doi:10.1261/rna.699907
  • ARTICLE:

    Characterization of a natural heterodimer between MLV genomic RNA and the SD′ retroelement generated by alternative splicing

    • Stéphan Maurel,
    • Laurent Houzet,
    • Eric L. Garcia,
    • Alice Telesnitsky,
    • and Marylène Mougel
    RNA December 2007 13:2266-2276; Published in Advance October 10, 2007, doi:10.1261/rna.713807
  • ARTICLE:

    Conversion of stable RNA hairpin to a metastable dimer in frozen solution

    • Xueguang Sun,
    • J. Michael Li,
    • and Roger M. Wartell
    RNA December 2007 13:2277-2286; Published in Advance October 9, 2007, doi:10.1261/rna.433307
  • ARTICLE:

    Alternately spliced WT1 antisense transcripts interact with WT1 sense RNA and show epigenetic and splicing defects in cancer

    • Anthony R. Dallosso,
    • Anne L. Hancock,
    • Sally Malik,
    • Ashreena Salpekar,
    • Linda King-Underwood,
    • Kathy Pritchard-Jones,
    • Jo Peters,
    • Kim Moorwood,
    • Andrew Ward,
    • Karim T.A. Malik,
    • and Keith W. Brown
    RNA December 2007 13:2287-2299; Published in Advance October 16, 2007, doi:10.1261/rna.562907
  • ARTICLE:

    Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing

    • Saba Valadkhan,
    • Afshin Mohammadi,
    • Chaim Wachtel,
    • and James L. Manley
    RNA December 2007 13:2300-2311; Published in Advance October 16, 2007, doi:10.1261/rna.626207
  • ARTICLE:

    Multisite and bidirectional exonic splicing enhancer in CD44 alternative exon v3

    • Elena Vela,
    • Josep M. Hilari,
    • Xavier Roca,
    • Ana M. Muñoz-Mármol,
    • Aurelio Ariza,
    • and Marcos Isamat
    RNA December 2007 13:2312-2323; Published in Advance October 16, 2007, doi:10.1261/rna.732807
  • ARTICLE:

    Dicer-1, but not Loquacious, is critical for assembly of miRNA-induced silencing complexes

    • Xiang Liu,
    • Joseph K. Park,
    • Feng Jiang,
    • Ying Liu,
    • Dennis McKearin,
    • and Qinghua Liu
    RNA December 2007 13:2324-2329; Published in Advance October 10, 2007, doi:10.1261/rna.723707
  • ARTICLE:

    Stimulation of picornavirus replication by the poly(A) tail in a cell-free extract is largely independent of the poly(A) binding protein (PABP)

    • Yuri V. Svitkin,
    • Mauro Costa-Mattioli,
    • Barbara Herdy,
    • Sandra Perreault,
    • and Nahum Sonenberg
    RNA December 2007 13:2330-2340; Published in Advance October 17, 2007, doi:10.1261/rna.606407
  • ARTICLE:

    Light-dependent RNA interference with nucleobase-caged siRNAs

    • Vera Mikat
    • and Alexander Heckel
    RNA December 2007 13:2341-2347; Published in Advance October 19, 2007, doi:10.1261/rna.753407
  • ARTICLE:

    Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation

    • Daoming Qin,
    • Nimo M. Abdi,
    • and Kurt Fredrick
    RNA December 2007 13:2348-2355; Published in Advance October 17, 2007, doi:10.1261/rna.715307
  • ARTICLE:

    3′ Terminal oligo U-tract-mediated stimulation of decapping

    • Man-Gen Song
    • and Megerditch Kiledjian
    RNA December 2007 13:2356-2365; Published in Advance October 17, 2007, doi:10.1261/rna.765807
  • ARTICLE:

    Cloning and expression profiling of small RNAs expressed in the mouse ovary

    • Seungil Ro,
    • Rui Song,
    • Chanjae Park,
    • Huili Zheng,
    • Kenton M. Sanders,
    • and Wei Yan
    RNA December 2007 13:2366-2380; Published in Advance October 19, 2007, doi:10.1261/rna.754207
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December 2007; 13 (12)
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  1. LETTERS TO THE EDITOR
  2. BIOINFORMATICS
  3. REPORTS
  4. ARTICLES

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