Table of Contents

BIOINFORMATICS

Select this article
BIOINFORMATICS:
Archaeology and evolution of transfer RNA genes in the Escherichia coli genome
- Mike Withers,
- Lorenz Wernisch,
- and Mario Dos Reis
RNA June 2006 12:933-942; Published in Advance April 17, 2006, doi:10.1261/rna.2272306

REPORT

Select this article
REPORT:
Functional replacement of Trypanosoma brucei Argonaute by the human slicer Argonaute2
- Huafang Shi,
- Christian Tschudi,
- and Elisabetta Ullu
RNA June 2006 12:943-947; Published in Advance April 12, 2006, doi:10.1261/rna.20806
Select this article
REPORT:
Cryptic splice site usage in exon 7 of the human fibrinogen Bβ-chain gene is regulated by a naturally silent SF2/ASF binding site within this exon
- Silvia Spena,
- Maria Luisa Tenchini,
- and Emanuele Buratti
RNA June 2006 12:948-958; Published in Advance April 12, 2006, doi:10.1261/rna.2269306

METHOD

Select this article
METHOD:
Identification of RNA-binding proteins that regulate FGFR2 splicing through the use of sensitive and specific dual color fluorescence minigene assays
- Emily A. Newman,
- Stephanie J. Muh,
- Ruben H. Hovhannisyan,
- Claude C. Warzecha,
- Richard B. Jones,
- Wallace L. Mckeehan,
- and Russ P. Carstens
RNA June 2006 12:1129-1141; Published in Advance April 7, 2006, doi:10.1261/rna.34906
Select this article
METHOD:
Efficient RNA 5′-adenylation by T4 DNA ligase to facilitate practical applications
- Yangming Wang
- and Scott K. Silverman
RNA June 2006 12:1142-1146; Published in Advance April 17, 2006, doi:10.1261/rna.33106

BIOINFORMATICS

Archaeology and evolution of transfer RNA genes in the Escherichia coli genome

REPORT

Functional replacement of Trypanosoma brucei Argonaute by the human slicer Argonaute2

Cryptic splice site usage in exon 7 of the human fibrinogen Bβ-chain gene is regulated by a naturally silent SF2/ASF binding site within this exon

ARTICLE

The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold

Arrested yeast splicing complexes indicate stepwise snRNP recruitment during in vivo spliceosome assembly

Nucleobase catalysis in the hairpin ribozyme

Induction of the interferon response by siRNA is cell type– and duplex length–dependent

Autoregulation of the mRNA export factor Yra1p requires inefficient splicing of its pre-mRNA

tRNA^His guanylyltransferase adds G₋₁ to the 5′ end of tRNA^His by recognition of the anticodon, one of several features unexpectedly shared with tRNA synthetases

Functions of hUpf3a and hUpf3b in nonsense-mediated mRNA decay and translation

Functional characterization of the conserved amino acids in Pop1p, the largest common protein subunit of yeast RNases P and MRP

Compositionally and functionally distinct editosomes in Trypanosoma brucei

Interactions of mRNAs and gRNAs involved in trypanosome mitochondrial RNA editing: Structure probing of a gRNA bound to its cognate mRNA

Restoration in vivo of defective hepatitis delta virus RNA genomes

Assessing IRES activity in the HIF-1α and other cellular 5′ UTRs

CUG-BP binds to RNA substrates and recruits PARN deadenylase

The coiled-coil domain of the Nop56/58 core protein is dispensable for sRNP assembly but is critical for archaeal box C/D sRNP-guided nucleotide methylation

Residues in two homology blocks on the amino side of the tRNase Z His domain contribute unexpectedly to pre-tRNA 3′ end processing

hnRNP A1 associates with telomere ends and stimulates telomerase activity

METHOD

Identification of RNA-binding proteins that regulate FGFR2 splicing through the use of sensitive and specific dual color fluorescence minigene assays

Efficient RNA 5′-adenylation by T4 DNA ligase to facilitate practical applications

This Issue

Current Issue

Table of Contents

BIOINFORMATICS

Archaeology and evolution of transfer RNA genes in the Escherichia coli genome

REPORT

Functional replacement of Trypanosoma brucei Argonaute by the human slicer Argonaute2

Cryptic splice site usage in exon 7 of the human fibrinogen Bβ-chain gene is regulated by a naturally silent SF2/ASF binding site within this exon

ARTICLE

The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold

Arrested yeast splicing complexes indicate stepwise snRNP recruitment during in vivo spliceosome assembly

Nucleobase catalysis in the hairpin ribozyme

Induction of the interferon response by siRNA is cell type– and duplex length–dependent

Autoregulation of the mRNA export factor Yra1p requires inefficient splicing of its pre-mRNA

tRNAHis guanylyltransferase adds G−1 to the 5′ end of tRNAHis by recognition of the anticodon, one of several features unexpectedly shared with tRNA synthetases

Functions of hUpf3a and hUpf3b in nonsense-mediated mRNA decay and translation

Functional characterization of the conserved amino acids in Pop1p, the largest common protein subunit of yeast RNases P and MRP

Compositionally and functionally distinct editosomes in Trypanosoma brucei

Interactions of mRNAs and gRNAs involved in trypanosome mitochondrial RNA editing: Structure probing of a gRNA bound to its cognate mRNA

Restoration in vivo of defective hepatitis delta virus RNA genomes

Assessing IRES activity in the HIF-1α and other cellular 5′ UTRs

CUG-BP binds to RNA substrates and recruits PARN deadenylase

The coiled-coil domain of the Nop56/58 core protein is dispensable for sRNP assembly but is critical for archaeal box C/D sRNP-guided nucleotide methylation

Residues in two homology blocks on the amino side of the tRNase Z His domain contribute unexpectedly to pre-tRNA 3′ end processing

hnRNP A1 associates with telomere ends and stimulates telomerase activity

METHOD

Identification of RNA-binding proteins that regulate FGFR2 splicing through the use of sensitive and specific dual color fluorescence minigene assays

Efficient RNA 5′-adenylation by T4 DNA ligase to facilitate practical applications

This Issue

Current Issue

tRNA^His guanylyltransferase adds G₋₁ to the 5′ end of tRNA^His by recognition of the anticodon, one of several features unexpectedly shared with tRNA synthetases