Table of Contents

REVIEW

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REVIEW:
Prp8 protein: At the heart of the spliceosome
- RICHARD J. GRAINGER
- and JEAN D. BEGGS
RNA May 2005 11:533-557; doi:10.1261/rna.2220705

LETTERS TO THE EDITOR

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LETTER TO THE EDITOR:
Human mitochondrial TyrRS disobeys the tyrosine identity rules
- LUC BONNEFOND,
- MAGALI FRUGIER,
- RICHARD GIEGÉ,
- and JOËLLE RUDINGER-THIRION
RNA May 2005 11:558-562; doi:10.1261/rna.7246805
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LETTER TO THE EDITOR:
Editing efficiency of a Drosophila gene correlates with a distant splice site selection
- RITESH AGRAWAL
- and GARY D. STORMO
RNA May 2005 11:563-566; doi:10.1261/rna.7280605

BIOINFORMATICS

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BIOINFORMATICS:
Co-evolution of tRNA 3′ trailer sequences with 3′ processing enzymes in bacteria
- ZHONGWEI LI,
- XIN GONG,
- VEDANG H. JOSHI,
- and MUXIN LI
RNA May 2005 11:567-577; Published in Advance April 5, 2005, doi:10.1261/rna.7287505
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BIOINFORMATICS:
Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency
- PETER CLOTE,
- FABRIZIO FERRÉ,
- EVANGELOS KRANAKIS,
- and DANNY KRIZANC
RNA May 2005 11:578-591; doi:10.1261/rna.7220505

REPORT

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REPORT:
A novel RNA pentaloop fold involved in targeting ADAR2
- RICHARD STEFL
- and FRÉDÉRIC H.-T. ALLAIN
RNA May 2005 11:592-597; doi:10.1261/rna.7276805

METHODS

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METHOD:
RNA hydrolysis and inhibition of translation by a Co(III)–cyclen complex
- JAMES B. DELEHANTY,
- THOMAS C. STUART,
- D. ANDREW KNIGHT,
- ELLEN R. GOLDMAN,
- DZUNG C. THACH,
- JASON E. BONGARD,
- and EDDIE L. CHANG
RNA May 2005 11:831-836; doi:10.1261/rna.7156805
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METHOD:
Complete, gene-specific siRNA libraries: Production and expression in mammalian cells
- ATTILA A. SEYHAN,
- ALEXANDER V. VLASSOV,
- HEINI ILVES,
- LEVENTE EGRY,
- ROGER L. KASPAR,
- SERGEI A. KAZAKOV,
- and BRIAN H. JOHNSTON
RNA May 2005 11:837-846; doi:10.1261/rna.7285805

REVIEW

Prp8 protein: At the heart of the spliceosome

LETTERS TO THE EDITOR

Human mitochondrial TyrRS disobeys the tyrosine identity rules

Editing efficiency of a Drosophila gene correlates with a distant splice site selection

BIOINFORMATICS

Co-evolution of tRNA 3′ trailer sequences with 3′ processing enzymes in bacteria

Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency

REPORT

A novel RNA pentaloop fold involved in targeting ADAR2

ARTICLES

The human U5 snRNP 52K protein (CD2BP2) interacts with U5-102K (hPrp6), a U4/U6.U5 tri-snRNP bridging protein, but dissociates upon tri-snRNP formation

Molecular dynamics simulations and free energy calculations of base flipping in dsRNA

A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification

Seawi—a sea urchin piwi/argonaute family member is a component of MT-RNP complexes

Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit

Transfer-messenger RNA unfolds as it transits the ribosome

The contributions of dsRNA structure to Dicer specificity and efficiency

Determinants of the inherent strength of human 5′ splice sites

Exon repression by polypyrimidine tract binding protein

A role for eIF4E and eIF4E-transporter in targeting mRNPs to mammalian processing bodies

The N-terminal extension of Escherichia coli ribosomal protein L20 is important for ribosome assembly, but dispensable for translational feedback control

Structural implications of novel diversity in eucaryal RNase P RNA

In vivo aggregation properties of the nuclear poly(A)-binding protein PABPN1

UTP-dependent turnover of Trypanosoma brucei mitochondrial mRNA requires UTP polymerization and involves the RET1 TUTase

6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter

Transcription and RNA-processing in fission yeast mitochondria

A reduced level of charged tRNA^Arg_mnm⁵UCU triggers the wild-type peptidyl-tRNA to frameshift

The N- and C-terminal RNA recognition motifs of splicing factor Prp24 have distinct functions in U6 RNA binding

tRNA m⁷G methyltransferase Trm8p/Trm82p: Evidence linking activity to a growth phenotype and implicating Trm82p in maintaining levels of active Trm8p

METHODS

RNA hydrolysis and inhibition of translation by a Co(III)–cyclen complex

Complete, gene-specific siRNA libraries: Production and expression in mammalian cells

This Issue

Current Issue

Table of Contents

REVIEW

Prp8 protein: At the heart of the spliceosome

LETTERS TO THE EDITOR

Human mitochondrial TyrRS disobeys the tyrosine identity rules

Editing efficiency of a Drosophila gene correlates with a distant splice site selection

BIOINFORMATICS

Co-evolution of tRNA 3′ trailer sequences with 3′ processing enzymes in bacteria

Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency

REPORT

A novel RNA pentaloop fold involved in targeting ADAR2

ARTICLES

The human U5 snRNP 52K protein (CD2BP2) interacts with U5-102K (hPrp6), a U4/U6.U5 tri-snRNP bridging protein, but dissociates upon tri-snRNP formation

Molecular dynamics simulations and free energy calculations of base flipping in dsRNA

A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification

Seawi—a sea urchin piwi/argonaute family member is a component of MT-RNP complexes

Nonbridging phosphate oxygens in 16S rRNA important for 30S subunit assembly and association with the 50S ribosomal subunit

Transfer-messenger RNA unfolds as it transits the ribosome

The contributions of dsRNA structure to Dicer specificity and efficiency

Determinants of the inherent strength of human 5′ splice sites

Exon repression by polypyrimidine tract binding protein

A role for eIF4E and eIF4E-transporter in targeting mRNPs to mammalian processing bodies

The N-terminal extension of Escherichia coli ribosomal protein L20 is important for ribosome assembly, but dispensable for translational feedback control

Structural implications of novel diversity in eucaryal RNase P RNA

In vivo aggregation properties of the nuclear poly(A)-binding protein PABPN1

UTP-dependent turnover of Trypanosoma brucei mitochondrial mRNA requires UTP polymerization and involves the RET1 TUTase

6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter

Transcription and RNA-processing in fission yeast mitochondria

A reduced level of charged tRNAArgmnm5UCU triggers the wild-type peptidyl-tRNA to frameshift

The N- and C-terminal RNA recognition motifs of splicing factor Prp24 have distinct functions in U6 RNA binding

tRNA m7G methyltransferase Trm8p/Trm82p: Evidence linking activity to a growth phenotype and implicating Trm82p in maintaining levels of active Trm8p

METHODS

RNA hydrolysis and inhibition of translation by a Co(III)–cyclen complex

Complete, gene-specific siRNA libraries: Production and expression in mammalian cells

This Issue

Current Issue

A reduced level of charged tRNA^Arg_mnm⁵UCU triggers the wild-type peptidyl-tRNA to frameshift

tRNA m⁷G methyltransferase Trm8p/Trm82p: Evidence linking activity to a growth phenotype and implicating Trm82p in maintaining levels of active Trm8p